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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Steve Brohard | 16th | Chad Parga | Tied for 17th | 13th |
| First Basemen | Matt Ferris | 19th | John Stout | 18th | 18th |
| Second Basemen | Israel Galvan | 20th | Luke Cappelluti | 16th | 20th |
| Third Basemen | Justin Heath | 21st | Dave Tennant | 15th | 19th |
| Shortstops | Eric Petry | 27th | Dave Klotz | 27th | 29th |
| Left Fielders | Colin Woodson | 6th | Brenden McFaul | 28th | 25th |
| Center Fielders | Chris Grover | 19th | Antonio Gomez | Tied for 12th | 14th |
| Right Fielders | Rich Jones | 30th | Jason Sisk | 10th | 25th |
| Starting Pitchers | Juan Murillo | 3rd | Jim Johnson | 27th | 4th |
| Relievers | Jose Munoz | 23rd | Steve Gibbons | 28th | 27th |
| Closers | Jonathan Jackson | 19th | Cameron Lopez | Tied for 20th | 20th |
