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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Steve Brohard | 16th | Chad Parga | 17th | 13th |
| First Basemen | Matt Ferris | 6th | Travis McGehee | 16th | 4th |
| Second Basemen | Israel Galvan | 23rd | John Stout | 23rd | 21st |
| Third Basemen | Justin Heath | 25th | Dave Tennant | 12th | 20th |
| Shortstops | Eric Petry | 22nd | Tied for 28th | 29th | |
| Left Fielders | Colin Woodson | 10th | Brenden McFaul | 29th | 25th |
| Center Fielders | Chris Grover | 20th | Juan Maes | Tied for 10th | 14th |
| Right Fielders | John Bragg | 19th | Jason Sisk | 10th | 10th |
| Starting Pitchers | Juan Murillo | 3rd | Jim Johnson | 28th | 15th |
| Relievers | Antonio Garcia | 22nd | Gianfrancesco Chechi | 28th | 26th |
| Closers | Jonathan Jackson | 7th | Aaron Russell | 30th | 30th |
