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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Steve Brohard | 16th | Ryan Battaglia | 17th | 15th |
| First Basemen | Matt Ferris | 18th | John Stout | 19th | 16th |
| Second Basemen | Jimmy Ashby | 28th | Luke Cappelluti | Tied for 23rd | 26th |
| Third Basemen | Justin Heath | 24th | Ruben Bustamante | 2nd | 19th |
| Shortstops | Mayis Bogolyubski | 12th | Tied for 28th | 27th | |
| Left Fielders | Colin Woodson | 9th | Jim Brown | 11th | 9th |
| Center Fielders | Chris Grover | 20th | Alex Ramirez | Tied for 8th | 12th |
| Right Fielders | Romeu Borlido | 22nd | Chad Sample | 22nd | 20th |
| Starting Pitchers | Juan Murillo | 1st | Brian Stefanopoulos | 20th | 2nd |
| Relievers | Andy Derickson | 8th | Cameron Lopez | 30th | 14th |
| Closers | Jonathan Jackson | 19th | Gianfrancesco Chechi | 15th | 16th |
