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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Steve Brohard | 12th | Chad Parga | 17th | 11th |
| First Basemen | Matt Ferris | 11th | John Stout | 12th | 11th |
| Second Basemen | Israel Galvan | 21st | Luke Cappelluti | Tied for 23rd | 21st |
| Third Basemen | Travis Hall | 24th | Dave Tennant | 15th | 19th |
| Shortstops | Eric Petry | 23rd | 27th | 28th | |
| Left Fielders | Colin Woodson | 7th | Brenden McFaul | 27th | 27th |
| Center Fielders | Chris Grover | 20th | Juan Maes | 10th | 13th |
| Right Fielders | Gilberto Ruiz | 22nd | Jason Sisk | Tied for 14th | 19th |
| Starting Pitchers | Juan Murillo | 2nd | Jim Johnson | 28th | 20th |
| Relievers | Antonio Garcia | 19th | Steve Gibbons | Tied for 27th | 27th |
| Closers | Jonathan Jackson | 14th | Cameron Lopez | Tied for 27th | 14th |
