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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Kevin Novak | 13th | Nate Roach | Tied for 15th | 12th |
| First Basemen | Roger Lazo | 25th | Armando Paredes | Tied for 20th | 23rd |
| Second Basemen | Gustavo Gentil | 30th | Brian King | 21st | 28th |
| Third Basemen | Jeremy Cromer | 3rd | Eduardo Silva | 16th | 2nd |
| Shortstops | Matt Ridenour | 19th | Jimmy Smith | 17th | 20th |
| Left Fielders | Nazir Roundtree | 6th | Alex Aponte | Tied for 19th | 7th |
| Center Fielders | Carlos Gonzalez | 22nd | Alex Roman | Tied for 9th | 15th |
| Right Fielders | Micah Pitts | 7th | Pat Rosen | 6th | 6th |
| Starting Pitchers | Kyle Putman | 5th | Jon Kmiec | 5th | 2nd |
| Relievers | Ivan Negrete | 14th | Bill Dixon | 22nd | 14th |
| Closers | Steve Schuessler | 19th | Mike Boothe | 12th | 17th |
