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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Aaron Moore | 2nd | Andy Tucker | 16th | 2nd |
| First Basemen | Alex Ynclan | 7th | Juan Lopez | 12th | 7th |
| Second Basemen | Andres Castaneda | 13th | Shane Nelson | Tied for 25th | 14th |
| Third Basemen | Angel Lomas | 23rd | Bob Maples | 2nd | 16th |
| Shortstops | Juan Rolon | 13th | Frank Contreras | Tied for 12th | 8th |
| Left Fielders | Cody Griffore | 27th | Ray Torson | 10th | 20th |
| Center Fielders | Matt Pullen | 16th | Tied for 29th | 30th | |
| Right Fielders | Jay Brown | 21st | Alex Ruiz | Tied for 17th | 18th |
| Starting Pitchers | Ryan Cross | 29th | Tony Arroyo | 23rd | 29th |
| Relievers | Sean Masiello | 4th | Jorge Ramirez | 2nd | 1st |
| Closers | Jason Sullivan | 2nd | Jonathon Huls | 10th | 3rd |
