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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Ryan Gruber | 12th | Alex Lopez | Tied for 17th | 9th |
| First Basemen | Tony Gomez | 9th | Mark Rosser | 16th | 9th |
| Second Basemen | Jody Nida | 26th | Jorge Davalos | 5th | 26th |
| Third Basemen | David Lopez | 27th | Andrew Robidoux | Tied for 19th | 24th |
| Shortstops | Jaime Flores | 17th | Eric Webb | 20th | 22nd |
| Left Fielders | Zach Yocom | 3rd | Manny Diaz | 10th | 2nd |
| Center Fielders | Eddie Benavidez | 7th | Kevin Donhauser | Tied for 11th | 4th |
| Right Fielders | Russ Boswell | 6th | Ken Rhyne | 14th | 5th |
| Starting Pitchers | Jonathan Hilton | 16th | Xavier Boyle | 3rd | 10th |
| Relievers | John LaCoe | 26th | Gabe Smith | 30th | 29th |
| Closers | Mel Martinez | 19th | Mike Mackey | 15th | 17th |
