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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Craig Higginbotham | 20th | Devin Walsh | Tied for 13th | 13th |
| First Basemen | Steve Spargo | 12th | Oscar Nunez | 14th | 11th |
| Second Basemen | Sean Dobbs | 14th | Jesse Kness | Tied for 20th | 17th |
| Third Basemen | Jose Ayala | 4th | Edwin Guzman | Tied for 21st | 4th |
| Shortstops | Tony Alvarado | 25th | Ernie Jarema | 9th | 15th |
| Left Fielders | Chris Graves | 20th | Mark Rentmeister | 17th | 17th |
| Center Fielders | Nate Hall | 6th | Tied for 28th | 28th | |
| Right Fielders | Antonio Marquez | 21st | Willie Vazquez | 11th | 13th |
| Starting Pitchers | Adam Howard | 11th | Bill Griffin | 14th | 9th |
| Relievers | Anibal Bago | 1st | Jamie Harris | 16th | 1st |
| Closers | Justin Branch | 20th | Christian Dixon | 27th | 28th |
